5.2 Problems with Totals after running capture

Has anyone ran capture in training database for 5.2 to compare it to
5.1? We have a training database for 5.1 and 5.2 that we backup the
exact data and ran capture on both and we came up with different
numbers posting to the g/l. I was wondering if anyone has run this
type of test and if so if you had any variances between the two
files. We have contacted Epicor and their only explaination is the
corrections made in 5.2 to the Quality Module on how it deal with the
costs for DMR rejected parts. Thanks in advance for your reply.
Stephanie Geary