Cust Deposit in Cash Receipt

We had a customer make a payment (in full) before shipment. We used the Cash Receipt program to do a Deposit Payment. That went fine. Now, how do we allocate that deposit now that the order has shipped?

Check out this KB on Deposit Billing Cleanup. KB0023458

The process we follow is applying that deposit payment to the order, so that when the shipment invoice is done the invoice is generated less the deposit and there is no cleanup to do. Epicor handles all of the details and the GL transactions.