In 2024.1 most of my slide outs were calling Menu IDs with a layer defined, both in the menu id and in the call for the slide out. I ended up having to remove the call from the slide out ANDF copy the Menu IDs tot he current company for all of my companies, it seems the All Company flag is not honored in 2025.2.
If I go through the menu for them normally, they all work but calling them this way did not seem to translate.